COMRAD - comparative radiation hybrid mapping
 
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Markers

BTA 16

Framework markers
Marker ID
Primer 1
Primer 2
Retention Frequency
Gene Name
F1
BM121
TGGCATTGTGAAAAGAAGTAAA
ACTAGCACTATCTGGCAAGCA
0.215
 
 
BM1311
AAGTGCTGGGCACGACTG
GGTGGGAGCTGAAATCACC
0.22
 
F2
BM1706
ACAGGACGGTTTCTCCTTATG
CTTGCAGTTTCCCATACAAGG
0.245
 
 
BM3011
TCCAACATCCCTCTACACAGG
CTGTGATGTGATAGTGCGAGC
0.191
 
 
BM3509
AGGGGTAAACAATCCCCAAC
CTTCAGACGAAGTGGATGAGC
0.202
 
F1
BM4025
TCGAATGAACTTTTTTGGCC
CACTGACTATGTGACTTTGGGC
0.196
 
 
BM6430
CCAGGCTCTTCCTCCTGTTC
GGGAAGGAGACTTAGGGCC
0.326
 
 
BM719
TTCTGCAAATGGGCTAGAGG
CACACCCTAGTTTGTAAGCAGC
0.223
 
 
BM8225
AACAGCTCTAGGTGGACAAC
CTGAGCTTCATCCTCACAACC
0.223
 
 
BM9034
AGGTCCACAGTTGGGTCTTG
AGCAGTATAAACTCACACCCCA
0.253
 
 
BMS1181
TTCTGCCTCTAAGGATGAGACC
AATCGCATCTGTGTGAGTGG
0.183
 
 
BMS1185
TATTAAGTGCTTATTTGTGGCG
GACCCTTCTTTCTCTCCAGC
0.226
 
 
BMS357
TCCAAACAAGTCTTCTCTATTTACC
CCAAATAATTGCTGGTCAGG
0.362
 
F2
BMS462
TGCAGACGGGAGAAAAGC
CTCACTTCCTCCTCAGGTGC
0.213
 
 
BMS538
TGCTCAGTTATGCTTGAGAGTC
TCCAAGTTGAGCCTTAGTTCTT
0.234
 
F2
BMS719
AAGTGCACGCTAACACGTTG
CCTCCCTCTCCCTCTGTTTC
0.234
 
 
CSSM003
GTACCTTAAGGTCAAGGGCTTTCT
TGGGTCCAATTGAGAATCTTCATG
0.234
 
 
ETH11
GGCGGACAAGAGTTCTCAGAGAC
CTTGACACATCATTGAGCACATGC
0.202
 
 
HUJ614
CGCCAGGCATGGTGAAGTCG
CCCAGCACAGTACAGGCTGC
0.372
 
 
HUJ625
AGCAGCATGAAGAGAGTCCC
GAGGTCACATACCCATCAAGC
0.213
 
 
IDVGA25C
GTGGCGTACCCTGTAGACTC
ATTTTGATCCCTTCAGCTTAG
0.261
 
 
IDVGA26
TGAGGACTCAACCCACATTTTG
AAAGAGTGCAACGGGAAAGTG
0.269
 
 
IDVGA49
CAGCTCCATTTCTCCTGTTT
GGGAGATGATACTTTCCAGTG
0.245
 
F1
IDVGA68
TCAGAGGGGCAGACAGTGAT
GAGGGACTTGGGAGGGAAAC
0.298
 
 
IDVGA69
TGTGCCTTGGGATGATTTTT
CAGCGTCTGTGGACCATTTC
0.213
 
F2
INRA013
GCACAGTGACCTCTCAATAAATGC
CCACTATTCTTGCCTGAAGAATCC
0.191
 
 
INRA048
CTGTCCCTCAGTAAACAAGTCG
AAGCTAAAGTAGCAGGGAAGG
0.191
 
F2
INRA35
ATCCTTTGCAGCCTCCACATTG
TTGTGCTTTATGACACTATCCG
0.223
 
F2
ISAGBUTG1
CAAAAAGAGAAAAACAGCACCG
ACTAAGCCAGACACGCCCAC
0.226
 
 
MGTG1
TGCATAACAAAGAAAAGTAGCTGAG
TTAGTTTGTCCCTAGTGCTCTCATG
0.33
 
 
PIGR*
CTTCGGTCCCGAGGAGGTGACCAG
CGAAGCTTAGGCCACGGCTGCTAA
0.323
polymeric immunoglobulin receptor
F1
TGLA53
GCTTTCAGAAATAGTTTGCATTCA
ATCTTCACATGATATTACAGCAGA
0.239
 
Not included in map
 
BMS1348
AAATAAATGTCACCTATGGGGC
AGGTGCGACTGAGACATGC
0.277
 
 
BMS1915
TCTACTGGTATGGCCACTTAGC
TTACATCCTCCAACCCCATT
0.183
 

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© Roslin Institute 2002

Dr John Williams
0131 527 4200