CaDBase
Genetic Diversity in Cattle
 
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Reference DNA Results

Allele sizes are given in base pairs, and are sized using a set of reference DNAs. This data does not necessarily correspond to the ISAG International Comaprison Test. To allow comparisons the reference DNAs below would have to be typed.

You can view some of the conversions for the microsatellite panel for the ISAG International Comaprison Test.

Reference DNAs are as follows:

  • 1 - Holstein
  • 2 - Ayrshire
  • 3 - Limousin
  • 4 - Charolais
  • 5 - Aberdeen Angus
  • 6 - Piedmontese
  • 405 - Butana
  • A18 - Hariana
  • 982 - Tharparkar
Marker number Marker DNA Sample
1 2 3 4 5 6 405 A18 982
1 INRA063
(D18S5) 		175,177 175,177 175,175 175,175 175,175 175,175 183,185 177,183 183,183
2 INRA005
(D12S4)		 143,143 143,143 139,141 141,143 143,143 141,143 137,141 141,143 139,143
3 ETH225
(D9S1)		 139,149 143,143 147,149 139,149 139,149 147,149 139,157 157,157 153,157
4 ILSTS005
(D10S25)		 186,186 184,186 186,186 186,186 184,186 186,186 182,190 184,186 186,190
5 HEL5
(D21S15)		 163,163 153,167 153,155 165,165 153,167 153,163 155,155   151,151
6 HEL1
(D15S10)		 105,105 105,105 113,113 105,111 105,105 105,113 103,107 107,107 111,117
7 INRA035
(D16S11)		 104,104 104,104 104,104 104,104 104,104 102,104 104,104 104,120 102,104
8 ETH152
(D5S1)		 197,201 197,197 197,197 197,207 195,203 195,197 191,197 191,191 191,191
9 INRA023
(D3S10)		 209,211 207,215 201,215 199,207 207,211 207,215 215,215 197,203 215,215
10 ETH10
(D5S3)		 211,219 211,213 213,217 215,215 217,217 215,219 207,209 207,217 211,217
11 HEL9
(D8S4)		 153,165 153,153 153,153 155,159 159,167 153,153 155,155 151,155 157,161
12 CSSM66
(D14S31)		 189,193 195,197 179,189 185,189 183,187 185,185 185,193 187,199 181,197
13 INRA032
(D11S9)		 180,184 180,184 178,184 168,168 180,180 180,180 176,176 184,190 184,190
14 ETH3
(D19S2)		 117,129 119,125 117,117 117,125 117,119 119,125 103,117 117,119 117,119
15 BM2113
(D2S26)		 128,136 134,136 136,140 128,136 126,140 136,140 136,138 136,142 136,142
16 BM1824
(D1S34)		 183,189 179,179 183,189 181,183 179,189 179,181 179,193 181,183 181,183
17 HEL13
(D11S15)		 190,192 188,196 188,192 192,192 192,192 192,192 182,186 186,186 186,186
18 INRA037
(D10S12)		 120,128 144,144 128,132 132,146 132,132 124,132 122,128 122,128 122,132
19 BM1818
(D23S21)		 260,264 264,268 260,260 264,264 262,264 258,264 256,266 262,270 262,262
20 ILSTS006
(D7S8)		 289,295 289,291 297,297 289,301 289,291 289,293 293,295 295,297 295,297
21 MM12
(D9S20)		 119,131 115,131 119,121 131,133 119,123 131,131 121,123 107,121 121,127
22 CSRM60
(D10S5)		 93,101 93,93 101,105 99,101 103,105 97,105 93,93 93,111 93,93
23 ETH185
(D17S1)		 232,232 230,238 220,234 234,234 228,232 234,238 228,228 222,228 222,234
24 HAUT24
(D22S26)		 116,118 116,118 122,124 106,122 118,122 106,120 122,124 118,118  
25 HAUT27
(D26S21)		 142,150 148,148 142,142 144,150 148,150 148,148 146,150 146,148 146,150
26 TGLA227
(D18S1)		 93,93 83,91 85,91 93,99 83,91 85,91 79,89 79,79 79,79
27 TGLA126
(D20S1)		 119,119 121,125 117,119 119,119 121,127 119,127 119,127 119,127 119,131
28 TGLA122
(D21S6)		 148,148 140,142 142,172 142,150 150,154 152,160 142,144 144,162 148,170
29 TGLA53
(D16S3)		 157,157 157,167 169,171 157,163 155,173 151,167 157,179 157,163 159,163
30 SPS115
(D15)		 244,252 244,244 244,256 244,252 248,250 244,252 244,244   246,252

 
© Roslin Institute 2002

Dr John Williams
0131 527 4200