BoLA Nomenclature

International Society for Animal Genetics

 
 

 

Class IIb region sequences

 

DYA Sequences


             Exon 2                              10                                      20                                      30
DYA*01011    CT GAC CAC GTC GGC ACT TAC GGC ACA AAT GTC TAC CAG ACG TAC GGC ACC TCT GGC CAG TTC ACG TTT GAA TTT GAT GGA GAC GAG CTC TTC TAC GTG GAC
DYA*01012    -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
DYA*0102     -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                 40                                      50                                      60      
DYA*01011   CTG GGG AAA AAG GAG ACT GTC TGG CGG CTG TCC GAG TTT AGC AAT ATC ACC AAG TTT GAA GTT CAG AGC GCC CTG AGA AAC ATT GTT ATG TCA AAA AGA AAT
DYA*01012   --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --A --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
DYA*0102    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
 

                 70                                      80                  Exon 3                  90                                     100
DYA*01011   TTG GAC ATC TTG ATA AAA AAT TCC AGC TTT ACA CCT GCC ACC AGT G    AA ATC CCT GAA GTG GCT GTG TTT CCC AAA TCC TCT GTG GTC CTG GGG ATT CCC
DYA*01012   --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -    ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** ***
DYA*0102    --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -    ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** ***


                                            110                                     120                                     130
DYA*01011   AAT ACC CTC ATC TGT CAA GTG GAC AAC ATC TTT CCT CCT GTG ATC AAC ATC ACT TGG TTT TAC AAT GGA CAC TTT GTT GCA GAA GGG ATC GCT GAG ACC ACC 
DYA*01012   *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** ***
DYA*0102    *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** ***


                            140                                     150                                     160            
DYA*01011   TTC TAC CCC AAG AGT GAC CAC TCT TTC CTC AAG TTC AGT TAC CTC ACC TTT CTT CCC ACC AGT GAA GAC TTC TAT GAC TGC AGA GTG GAG CAC TGG GGC CTG 
DYA*01012   *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** ***
DYA*0102    *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** ***


            170                                  Exon 4 180                                     190                                     200         
DYA*01011   GAA GAG CCT CGT CAA GCT GAC TGG G    AG CCT GAG ATT CCA ACC CCT ACA TCA GAG CTG ACA GAG ACT GTG GTC TGT GCC CTG GGG CTG GCC ATG GGC CTC
DYA*01012   *** *** *** *** *** *** *** *** *    ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** ***
DYA*0102    *** *** *** *** *** *** *** *** *    ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** ***


                                        210                                     220                                 
DYA*01011   ATG GGC ATC GTG GTG GGC ACT GTC CTC ATC CTC CGA GTC CGG TGC TTG GGT GCT GCC TCC AGA CGT CGA AGG GCC ATG TGA
DYA*01012   *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** ***
DYA*0102    *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** ***

DIB Sequence



             Exon 2                              10                                      20                                      30
DIB*0101     AG AAT TTC GTG TAC CAG TTT AAA GGC ATG TGC TAC TTC ACC AAC GGG ACA GAG CAC GTG AGG CTT GTG GCC AGA CAG ATC TAC AAC AAG GAA GAG ATC CTG


                                 40                                      50                                      60
DIB*0101    CAC TTT GAC AGT GAC CTG GGC GAG TTT GTG GCT GTT ACA GAG CTG GGC CGG GTG TGT GCG GAG ATC TGG AAC ACC CAG AAG GAC CTC CTG GCG GAG TTT CGG


                 70                                      80                                      90      Exon 3                             100
DIB*0101    GCC TAC GTG GAC ACG CTG TGT AGA CAC AAC TAC AAA GAG ACG GCC GGC TTC ACT GTC CAG CGG AGA G    TG GAG CCT ACA GTG ACT GTC TCT CCA GCC AGT


                                            110                                     120                                     130
DIB*0101    ACA GAG GCC CTG AAC CAC CAT AAT CTG CTG GTC TGT TCA GTG ACA GAT TTC TAC CCT CGC CAA GTT AAA GTC AAA TGG TTC CGG AAT CAA CAG GAG CAG ACA


                            140                                     150                                     160
DIB*0101    ACA GCT GGA GTT GGG TTC ACA CCT CTT ACT CAG AAT GGG GAC TGG ACC TAC CAG ATT CAC GTG ATG CTA GAG ACA GTT CCA CAG CTT GGA GAC GTC TAC GTT 


            170                                     180                      Exon 4             190                                     200
DIB*0101    CAC GTG GAC CAC CCC AGC CTC CAG AGC CCC ATC ACA GTA GAA TGG C    GG GCA CAG TCT GAA TCA GCC CAG AGC AAG ATG CAG AGC GGA ATT GGA GGT TTT


                                        210                                     220
DIB*0101    GTG CTG GGG CTG ATC TTC CTT GGT GTG GGC CTT TTT GTC CAC TTT TGG GAT AAG AGA G

DMA Sequence


                                                                                                                        alpha-1 domain      
            Signal peptide                                                                                                1
DMA*0101    ATG GAT CAT GAG CTG AGC CAG GAA GAT GTG CTG CTA CGG CTG CTC TCC TTT CTG TGG CTG CTG CCC CTG TCC TGG ACC     GCC CCT GAA GCT CCT GCT CCA  


                     10                                      20                                      30                                      40
DMA*0101    GGG TGG AGG GAT GAG CTA CAA AAC CAC ACG TTC CTG CAC ACA ATG TAC TGC CAG GAC TGG AGC CCC AAC GTG GCG CTC TCT GAG TCC TAC GAC GAG GAC CAG  


                                             50                                      60                                      70                
DMA*0101    CTT TTC TCC TTC GAC TTT TCC CAG AGC ATC CGA GTG CCT CGC TTG CCT GAA TTT GCT GAC TGG GCT CAC CAG CAC GGA GAT ACT TCT GAC ATT ATG TTT GAC  

                                                                                                            alpha-2 domain                  
                             80                                      90                                         100   
DMA*0101    AAA GGT TTT TGC CGG GCC ATG ATC GAG GAA ATT GGC CCA GAA CTT GAA GGG CAA ATC CCA GTG TCT AGA     GGG TTC CCC ATC GTT CAG GTG TTC ACA CTG 


                110                                     120                                     130                                     140   
DMA*0101    AAG CCC CTG GAG TTT GGC AAG CCC AAC ACG CTG GTC TGT TTC ATC AGT AAT CTC TTT CCA CCC ACA CTG ACC GTG AAC TGG CAG CAT CAG TCG GCA CCT GTG 


                                        150                                     160                                     170                     
DMA*0101    GAA GGA GCC GGG CCC ACT TTT GTC TCC GCG GTT GAT GGA CTC ACC TTC CAG GCC TTT TCC TAC TTA AAC GTC ACA CCA GCA CCC TCT GAT CTT TTC TCT TGC 


                        180                                     190         CP/TM/CY                        200                 
DMA*0101    ATC GTG ACT CAT GAG ATC GAT GGC TAC ACA GCA ATC GCT TTT TGG     GTG CCC CAG AAC GCG CTG CCC TCT GAT CTT CTG GAG AAT GTG CTG TGC GGC GTG 


            210                                     220                                     230                
DMA*0101    GCC TTT GGC CTG GGT GTG CTG GGC ATC ATT GTT GGC TTG GTC CTC TTC TAC TGC CGA AAG CCG TGC TTA GGG GGC TGA     

CP - connecting peptide;
TM - transmembrane region;
CY - cytoplasmic domain

DMB Sequence



                                                                                        beta-1 domain                                      
            Signal peptide                                                                1                                  10           
DMB*0101    ATG ACT GTC CTC CTG TCG CTG CTG CTG GGC TTC AGC CTG GGC TGC ACC GCA GCA     GGT GGT TTT GTG GCA CAC GTG GAA AGC ACC TGT GTG TTG GAC GAT 

  
                             20                                      30                                      40        
DMB*0101    GAT GGG GAT CCG AAA GAC TTC TCG TAT TGC ATC TCC TTC AAC AAG GAT TTG CTG ACC TGC TGG GAT CCC CTG CAG GCC AGT ATG ATT CCT CGT GAA TTT GGG 


             50                                      60                                      70                                      80        
DMB*0101    GTG CTG AAC GGC TTG GCC CGG TAC CTC TCA CAG TTC CTC AAC AAT AAT AGT TAC CTG ATC CAG CGC TTG TCC AAT GGT CTG CAG AAC TGT GCC GCG CAC ACC 


                                     90                         beta-2 domain   100                                     110        
DMB*0101    CAG CCC TTC TGG AGC TCT CTG ACC CAC AGG ACA CGC     CCA CCG ACC GTG CAG GTA GCC AAA ACC ACT CCT TTT AAC ACG AGG GAG TCT GTG ATG CTG GCC 


                        120                                     130                                     140                                     150
DMB*0101    TGC TAT GTG TGG GGC TTC TAT CCA GCG GAC GTG GCC ATC ACG TGG AGG AGG AAC GGG CAG GAG GTC CTC CCA CAC GGC AGG GCC TGG AGG ATC ATC CAG CCC 


                                                160                                     170                                     180        
DMB*0101    AAC GGA GAC TGG ACA TAC CAG ACC GTC TCC CAT CTG GCC ACA ACC CCC TCT TTT GGG GAT ACC TAC ACC TGT GTG GTC GAG CAC ATT GGG GCT CCT GAA CTC 

                                    CP/TM/CY
                                    190                                     200                                     210                      
DMB*0101    ATC CTT CAG GAC TGG     ACT CCT GGG CTG TTG CCT GCG CAG ACG GTG AAG GTT TCT GTG GCT CTG GTA ACG CTG GTC CTG GGT CTC ATC ATC TTC GTT TTC 


                    220                                     230                                     240        
DMB*0101    GGT CTG CAC AGT TGG CGG AGA GCC ACC TCC TCC GGC TAC ATT TTC CTC CCG GGG TCC ACT TAT CCA GAA GGT CAG CAC AAT TGA


CP - connecting peptide;
TM - transmembrane region;
CY - cytoplasmic domain

   
copyright Roslin Institute 2002